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Isborn CM, Götz AW, Clark MA, Walker RC, Martínez TJ.  2012.  Electronic absorption spectra from MM and ab Initio QM/MM molecular dynamics: environmental effects on the absorption spectrum of photoactive yellow protein. Journal of chemical theory and computation. 8:5092–5106.
Ufimtsev IS, Luehr N, Titov A, Martínez TJ.  2011.  Electronic Structure and First Principles Dynamics on Graphical Processing Units. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. 242
Parrish RM, Hohenstein EG, Schunck NF, C Sherrill D, Martínez TJ.  2013.  Exact Tensor Hypercontraction: A Universal Technique for the Resolution of Matrix Elements of Local Finite-Range N-Body Potentials in Many-Body Quantum Problems. Physical review letters. 111:132505.
Hudock H, Levine B, Martinez T.  2007.  Excited State Dynamics of DNA and RNA bases. APS Meeting Abstracts. 1:26007.
Hudock HR, Martínez TJ.  2008.  Excited-State Dynamics of Cytosine Reveal Multiple Intrinsic Subpicosecond Pathways. ChemPhysChem. 9:2486–2490.
Isborn CM, Luehr N, Ufimtsev IS, Martínez TJ.  2011.  Excited-state electronic structure with configuration interaction singles and Tamm–Dancoff time-dependent density functional theory on graphical processing units. Journal of chemical theory and computation. 7:1814–1823.
Mori T, Martínez TJ.  2013.  Exploring the Conical Intersection Seam: The Seam Space Nudged Elastic Band Method. Journal of Chemical Theory and Computation. 9:1155–1163.
M
Wang L-P, Pande V, Martinez T.  2012.  Markov-state model analysis of systems containing identical and exchangable components using an optimally permuted RMSD metric. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. 243
Kryger MJ, Ong MT, Odom SA, Sottos NR, White SR, Martínez TJ, Moore JS.  2010.  Masked cyanoacrylates unveiled by mechanical force. Journal of the American Chemical Society. 132:4558–4559.
May PA, White SR, Martínez TJ, Boydston AJ, Moore JS.  2014.  Mechanically triggered heterolytic unzipping of a low-ceiling-temperature polymer.
Diesendruck CE, Peterson GI, Kulik HJ, Kaitz JA, Mar BD, May PA, White SR, Martínez TJ, Boydston AJ, Moore JS.  2014.  Mechanically triggered heterolytic unzipping of a low-ceiling-temperature polymer. Nature Chemistry.
Silberstein MN, Min K, Cremar LD, Degen CM, Martínez TJ, Aluru NR, White SR, Sottos NR.  2013.  Modeling mechanophore activation within a crosslinked glassy matrix. Journal of Applied Physics. 114:023504.
Silberstein MN, Cremar LD, Beiermann BA, Kramer SB, Martínez TJ, White SR, Sottos NR.  2014.  Modeling mechanophore activation within a viscous rubbery network. Journal of the Mechanics and Physics of Solids. 63:141–153.
Spector LS, Miyabe S, Magana A, Petretti S, Decleva P, Martínez TJ, Saenz A, Guehr M, Bucksbaum PH.  2013.  Multiple orbital contributions to molecular high-harmonic generation in an asymmetric top. arXiv preprint arXiv:1308.3733.

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