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Stephan F, Boulware CH, Krasilnikov M, Bähr J, Asova G, Donat A, Gensch U, Grabosch HJ, Hänel M, Hakobyan L et al..  2010.  Detailed characterization of electron sources yielding first demonstration of European X-ray Free-Electron Laser beam quality. Physical Review Special Topics-Accelerators and Beams. 13:020704.
Kanter EP, Doumy G, March AM, Southworth SH, Young L, Bozek JD, Bostedt C, Messerschmidt M, .  2014.  Determination of the neon double core hole lifetime using high-intensity x-rays from the LCLS. Bulletin of the American Physical Society. 59
Kamalov A, Ware M, Bucksbaum P, Cryan J.  2016.  Developing a High-Flux Isolated Attosecond Pulse Source. Bulletin of the American Physical Society.
Sistrunk E, Grilj J, Guehr M.  2012.  Development of a High Harmonic Beamline for Time-Resolved XUV Spectroscopy. APS Division of Atomic, Molecular and Optical Physics Meeting Abstracts. 1:1031.
Li RK, Reid AH, Weathersby SP, Brown G, Centurion M, Chase T, Coffee R, Corbett J, Frisch JC, Güehr M et al..  2015.  Development of MeV Ultrafast Electron Scattering Instruments at SLAC National Accelerator Laboratory. Microscopy and Microanalysis. 21:1209–1210.
Larsen K, Champenois E, Wright T, Cryan J, Shivaram N, Ray D, Troy T, Bandyopadhyay B, Kostko O, Rude B et al..  2016.  Development of Multi-Color Time-Resolved Spectroscopy Methods for Investigating Molecular Systems. Bulletin of the American Physical Society.
Irizarry-Gelpí ME, Lindenberg A.  2007.  Development of Nanofluidic Cells for Ultrafast X rays Studies of Water.
Lindenberg A.  2011.  DEVELOPMENT OF ULTRAFAST HIGH-REPETITION RATE CAPABILITIES FOR SPEAR3 AND PEP-X.
Yang J, Guehr M, Vecchione T, Robinson MS, Li R, Hartmann N, Shen X, Coffee R, Corbett J, Fry A et al..  2015.  Diffractive imaging of a molecular rotational wavepacket with femtosecond Megaelectronvolt electron pulses. arXiv preprint arXiv:1510.06426.
Yang J, Guehr M, Vecchione T, Robinson MS, Li R, Hartmann N, Shen X, Coffee R, Corbett J, Fry A et al..  2016.  Diffractive imaging of a rotational wavepacket in nitrogen molecules with femtosecond megaelectronvolt electron pulses. Nature communications. 7
Coffee RN, Bucksbaum PH, Fang L, Gibson GN.  2007.  Direct Dissociation and Laser Modulated Predissociation of N.
Coffee RN, Bucksbaum PH, Fang L, Gibson GN.  2007.  Direct Dissociation and Laser Modulated Predissociation of N< sub> 2< sup>+. Quantum Electronics and Laser Science Conference. :JThD26.
Chase T, Trigo M, Reid AH, Li R, Vecchione T, Shen X, Weatherby S, Coffee R, Hartmann N, Reis DA et al..  2015.  Direct measurement of non-equilibrium phonon occupations in femtosecond laser heated Au films. arXiv preprint arXiv:1511.03187.
Jha SKumar, Ji M, Gaffney KJ, Boxer SG.  2011.  Direct measurement of the protein response to an electrostatic perturbation that mimics the catalytic cycle in ketosteroid isomerase. Proceedings of the National Academy of Sciences. 108:16612–16617.
Jha SKumar, Ji M, Gaffney KJ, Boxer SG.  2012.  Direct Measurement of the Protein Response to an Electrostatic Perturbation that Mimics the Catalytic Cycle in Ketosteroid Isomerase. Biophysical Journal. 102:273a.
Jha SKumar, Ji M, Gaffney KJ, Boxer SG.  2012.  Direct Measurement of the Protein Response to an Electrostatic Perturbation that Mimics the Catalytic Cycle in Ketosteroid Isomerase. BIOPHYSICAL JOURNAL. 102:273A–273A.
Trigo M, Fuchs M, Chen J, Jiang MP, Kozina ME, Ndabashimiye G, Cammarata M, Chien G, Fahy S, Fritz DM et al..  2013.  Direct measurement of time-dependent density-density correlations in a solid through the acoustic analog of the dynamical Casimir effect. arXiv preprint arXiv:1301.3503.
Coffee RN, Gibson GN.  2003.  Direct multiphoton excitation of molecular ions produces selectively excited fragments. Quantum Electronics and Laser Science Conference. :QML3.
Liu SH, Miller AD, Gaffney KJ, Szymanski P, Garrett-Roe S, Bezel I, Harris CB.  2002.  Direct observation of two-dimensional electron solvation at alcohol/Ag (111) interfaces. The Journal of Physical Chemistry B. 106:12908–12915.
Punwong C, Owens J, Martínez TJ.  2014.  Direct QM/MM Excited State Dynamics of Retinal Protonated Schiff Base in Isolation and Methanol Solution. The Journal of Physical Chemistry B.
Punwong C, Owens J, Martínez TJ.  2014.  Direct QM/MM Excited-State Dynamics of Retinal Protonated Schiff Base in Isolation and Methanol Solution. The Journal of Physical Chemistry B.
Punwong C, Owens J, Martínez TJ.  2014.  Direct QM/MM Excited-State Dynamics of Retinal Protonated Schiff Base in Isolation and Methanol Solution. The Journal of Physical Chemistry B. 119:704–714.
Punwong C, Martinez TJ, Hannongbua S.  2014.  Direct QM/MM simulation of photoexcitation dynamics in bacteriorhodopsin and halorhodopsin. Chemical Physics Letters.
Punwong C, Martinez TJ, Hannongbua S.  2014.  Direct QM/MM simulation of photoexcitation dynamics in bacteriorhodopsin and halorhodopsin. Chemical Physics Letters. 610:213–218.
Shi G, Kindratenko V, Ufimtsev I, Martínez TJ.  2010.  Direct self-consistent field computations on GPU clusters. Parallel & Distributed Processing (IPDPS), 2010 IEEE International Symposium on. :1–8.

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